Spectral Library Schema Validation Agent Skill

Use when after harmonizing MS/MS spectra and metadata fields (compound.

Context cost
1.8k tokensestimated from the bundle, loaded when it triggers
Bundle
1 file · 7.3 kBtext throughout, nothing executable
Licence
CC-BY-4.0the author’s own terms
Last change
—no release on file
Servers it uses
Noneruns standalone

What it does

Use when after harmonizing MS/MS spectra and metadata fields (compound

What this skill changes about the agent has not been set out here as a list. Its SKILL.md, shown below, says it in the author’s own words.

data science

The skill itself

A skill is instructions the model reads, so you can see what you are getting: below is the start of its SKILL.md. The front matter loads with every session, the body loads when the skill triggers, and the whole file comes with the install.

SKILL.md7.3 kB · preview
--- name: spectral-library-schema-validation license: CC-BY-4.0 metadata: edam_operation: http://edamontology.org/operation_3096 edam_topics: - http://edamontology.org/topic_3520 - http://edamontology.org/topic_0091 tools: - spectraverse-analysis repository - spectraverse-analysis - matchms techniques: - LC-MS license_tier: open provenance_tier: literature derived_from: - doi: 10.1021/acs.analchem.5c06256 title: Spectraverse evidence_spans: - github.com/skinniderlab/spectraverse-analysis claims: [] provenance: collection: https://w3id.org/holobiomicslab/asb-skill/collection/metabolomics/v2 assembled_by: scripts/collect_metabolomics_collection.py sources: - build: coll_spectraverse_cq doi: 10.1021/acs.analchem.5c06256 title: Spectraverse dedup_kept_from: coll_spectraverse_cq schema_version: 0.2.0 attribution: generator: AgenticScienceBuilder original_doi: 10.1021/acs.analchem.5c06256 all_source_dois: - 10.1021/acs.analchem.5c06256 zenodo_doi: 10.5281/zenodo.20794027 curators: [] promoter: Louis-Félix Nothias sponsor: CNRS & Université Côte d'Azur ---
47# spectral-library-schema-validation
48
49## Summary
50
51Validate preprocessed and harmonized MS/MS spectra and their metadata against a defined schema to ensure consistency, completeness, and conformance before library compilation. This skill detects structural inconsistencies, missing required fields, and format violations that would compromise downstream spectral matching and annotation.
52
53## When to use
54
55Apply this skill after harmonizing MS/MS spectra and metadata fields (compound identifiers, adduct annotations, collision energies, instrument types) to a common schema, and before exporting the spectral library to standardized formats (mzML, mzTab, or repository-native format). Use it to catch schema violations, duplicates, and incomplete annotations before final library release.
56
57## When NOT to use
58
59- Input spectra have not yet been harmonized or standardized to a common metadata schema — apply harmonization first.
60- Spectra are already in a pre-curated, vendor-supplied format with guaranteed schema compliance.
61- The goal is exploratory analysis of raw, unstructured spectral data rather than production library compilation.
62
63## Inputs
64
65- Harmonized MS/MS spectra in MGF or CSV format with standardized metadata fields
This is a preview of SKILL.md. Download or install the skill to get the whole thing.
In the file
SKILL.md889 words
Files1
LicenceCC-BY-4.0
Why you can read it

Nothing in a skill executes. The client loads the text and the model follows it, so a skill can be audited the way a runbook is — by reading it.

What it costs in context

Skills are not billed by the call. They are paid for in context: every token the instructions occupy is a token your code, your diff and your conversation cannot use. Here is what this one takes and when it takes it.

≈350
always loaded
The name and description, so the model knows the skill exists and when to reach for it.
1,475
on trigger
The instruction body, read only when the skill fires.
0.91%
of a 200k window
Ten skills this size would take about 9% of the window before you open a file.
050k100k150k200k context window

1.8k tokens, estimated from the bundle at four bytes to the token, held for the rest of the session once it triggers. Middling. Fine to keep on in a project where you use it weekly, worth unloading in one where you never do.

Servers bill, skills cost

A server charges by the month. A skill charges once per session, in context, and then keeps charging it for as long as the session lives.

Before and after

The same question, put to the same model twice: once as it comes, and once with these instructions loaded.

No worked example has been published for this skill yet.

The procedure it runs

The procedure has not been set out here step by step. It is in the body of its SKILL.md: the start of it is shown above, and the whole file comes with the install.

Prose, not code

These steps are written for a model to follow, not executed by a runtime. It can still be told to skip one, and it will say so when it does.

Servers it uses

None. This skill calls no MCP servers at all.

Everything it needs is in the instructions, so it works in a project with nothing connected — the model reads the file and changes how it works with what it can already reach.

Its SKILL.md does not declare which tools it asks the agent for, so what it touches is whatever the instructions themselves ask for — read them before you install it.

What it asks for
Writes filesnot declared
Network accessnot declared

This SKILL.md carries no allowed-tools line, so neither is declared. A skill grants no permissions of its own — it can only ask for tools your client already has.

What it will not do

Every skill is narrow, and the useful ones say where they stop. These are the jobs this one is the wrong tool for.

What this skill is not for has not been published here. Nothing is implied by that: it is a section the author has not filled in.

What is in the bundle

1 file, 7.3 kB on disk. A bundle is text throughout: the instructions the model reads, plus the templates it fills in.

  • SKILL.md7.3 kB
What is not in it

No dependencies and nothing executable: a skill is text the agent reads, so the bundle is 1 file you can review in full before installing. The CC-BY-4.0 licence covers the templates and examples as well as the instructions.

Install

Installing copies the bundle into your project. Nothing runs at install time — the files sit on disk until the model reads them.

# Spectral Library Schema Validation · 1.8k tokens when loaded · macOS, Linux mkdir -p .claude/skills && t=$(mktemp -d) && curl -fsSL -o "$t/bundle.tar.gz" https://mcprush.com/api/skills/spectral-library-schema-validation/bundle.tar.gz && tar -xzf "$t/bundle.tar.gz" -C "$t" && [ -d "$t/spectral-library-schema-validation" ] && { [ ! -e .claude/skills/spectral-library-schema-validation ] || { mv .claude/skills/spectral-library-schema-validation "$t/.previous" && echo "Previous copy moved to $t/.previous"; }; } && mv "$t/spectral-library-schema-validation" .claude/skills/ && echo "Installed .claude/skills/spectral-library-schema-validation"
On Windows, or any OS with Node 20+
npx mcprush@latest skill add holobiomicslab/spectral-library-schema-validation

Windows PowerShell says 'running scripts is disabled on this system'? Run Set-ExecutionPolicy -Scope CurrentUser RemoteSigned once, or type npx.cmd instead of npx (codex.cmd, gemini.cmd, grok.cmd likewise). PowerShell 7 needs neither. Writes to .claude/skills/spectral-library-schema-validation/ in the current project. For every project instead, run mkdir -p ~/.claude/skills && t=$(mktemp -d) && curl -fsSL -o "$t/bundle.tar.gz" https://mcprush.com/api/skills/spectral-library-schema-validation/bundle.tar.gz && tar -xzf "$t/bundle.tar.gz" -C "$t" && [ -d "$t/spectral-library-schema-validation" ] && { [ ! -e ~/.claude/skills/spectral-library-schema-validation ] || { mv ~/.claude/skills/spectral-library-schema-validation "$t/.previous" && echo "Previous copy moved to $t/.previous"; }; } && mv "$t/spectral-library-schema-validation" ~/.claude/skills/ && echo "Installed ~/.claude/skills/spectral-library-schema-validation" (macOS, Linux) — or add --global to the npx line. The curl line replaces .claude/skills/spectral-library-schema-validation/ only after the download succeeds, so files left there by another skill of the same name, or by an older release, do not mix in. A copy already there is moved aside, not deleted, and the line prints where.

Which clients pick it up on their own

A skill is a folder of text. Most of these read a skills folder and pick it up without being told; the rest take the same folder another way — an upload in the app, a parameter on an API call — and then choose it by its description just the same.

Claude Code.claude/skills/
Claude DesktopCustomize › Skills
ChatGPTSkills › Create › Upload
Cursor.cursor/skills/
VS Code.github/skills/
Codex CLI.agents/skills/
Gemini CLI.gemini/skills/
Grok Build.grok/skills/
Microsoft CopilotSkills › Upload a skill
PerplexityComputer › Skills › Upload a skill
DeepSeek Harness.dsh/skills/
Zed.agents/skills/
Devin Desktop.devin/skills/
Windsurf (legacy).windsurf/skills/
OpenAI Agents SDKInstructions or sandbox Skills
HTTP / APIa request parameter
This release
Versionnot versioned
Publishedno release date on file
PriceFree
Referenceholobiomicslab/spectral-library-schema-validation

Versions

Its author publishes no version number, so there is nothing here to pin to: what you install is the folder as it stands today. Instructions change more often than APIs do — a skill can be rewritten entirely without anything it depends on moving.

Pinning

Nothing to pin to: this skill carries no version number of its own. What you install is what the folder holds on the day you install it.

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