Research MCP Servers

FAS MCP — USDA Foreign Agricultural Service (trade & global production data)

Science MCP — free science data APIs

SGD (Saccharomyces Genome Database) MCP.

MCP server for querying Microsoft Planetary Computer STAC catalog

Plant genomics MCP — 50 tools across 23 live backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, Planteome, PlantCyc/PMN

PLOS journals — Solr-backed full-text search across all PLOS OA content

Slovenia Open Data (podatki.gov.si) CKAN MCP.

POWO (Plants of the World Online, by the Royal Botanic Gardens, Kew) MCP.

Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.

Federated protein structure and annotation search across PDB, AlphaFold DB, 3D-Beacons, UniProt and InterPro.

MCP server for querying FRINK SPARKQL endpoints, a project by the NSF Prototype Open Knowledge Network (Proto-OKN) program.

MCP that connects to wetlab protocol resources, including protocols.io

Search the PubChem chemical database for compounds, properties, safety data and bioactivity.

Search the PubChem chemical database for compounds, properties, safety data, bioactivity, cross-references, and entity summaries via MCP

MCP server for PubMed literature search and US/UK drug labelling — built by PharmaTools.AI

Search PubMed/Europe PMC, fetch articles, full text, citations and MeSH terms.

PubMed MCP server — agentic biomedical literature search for LLMs

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

Local stdio MCP server for PubMed with 10 tools: search, fetch, fetch_batch, get_full_text, count, find_similar_articles, export_to_ris

MCP server for PubMed literature search with MeSH, PICO, and intelligent query expansion

MCP server for the public PuRe (PubMan) REST API — search and retrieve Max Planck Society publications.