Research MCP Servers for DeepSeek Harness

MCP server exposing PaperQA2 for deep synthesis across scientific papers

MCP server for academic paper search across Semantic Scholar, PubMed, and arXiv

Federated research discovery with S-Index metrics across a network of digital twins.

Production-quality MCP server exposing the UniProt REST API (search, entries, FASTA, ID mapping, taxonomy) to LLM clients over stdio.

npx launcher for USPTO Patents MCP — hosted on Cloudflare Workers. US patent search and full-text via USPTO PatentsView

MCP server providing access to biotools and scientific literature via PubMed

MCP server providing AI agents access to the Isabl genomics platform

Fail-closed academic research server: search, full text, citations across open scholarly APIs.

MCP server for controlling LeCroy oscilloscopes via SCPI/VXI-11

MCP server for querying NASA's Exoplanet Archive

MCP Server for PatSnap API

MCP server for verifying academic citations via Semantic Scholar, OpenAlex, and CrossRef

MCP-powered Research Assistant for querying academic papers from arXiv, Semantic Scholar, and PubMed

MCP server for searching security conference papers from top-tier (S&P, USENIX Security, CCS, NDSS) and second-tier (ACSAC, RAID, ESORICS)

MCP server providing Wikipedia citation-science tools for Claude — pure Python, no R required

MCP server for WormBase REST API - access C. elegans and nematode biological data with natural language

MCP server exposing Zotero local write operations (DOI import, PDF import with recognition, attach PDF, add note)

AI-powered bioprotocol optimization — generate, search, and manage lab protocols via MCP

MCP server for direct AI agent control of lab devices — VISA/SCPI instruments, SSH hosts, REST APIs, serial devices, and Python environments

Agent integration with the Northwestern University Libraries Digital Collections API

Every OpenAlex search stores its request, response and checksums so sources can be checked later.