Protein grouping and inference from peptide identifications.
Analyze saved trajectories and recall audit events offline to record whether recalled guidelines influenced completed sessions.
Query provenance chains to trace artifact derivation and impact
Generate provenance coverage dashboard and statistics
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds).
Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization.
Differential gene expression analysis (Python DESeq2).
Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and…
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for…
Python visual creation and matplotlib/seaborn patterns for PBIR reports.
Write docstrings for PyTorch functions and methods following PyTorch conventions.
High-level PyTorch framework with Trainer class, automatic distributed training (DDP/FSDP/DeepSpeed), callbacks system, and minimal…
Provides guidance for performing causal interventions on PyTorch models using pyvene's declarative intervention framework.
Interact with Zotero reference management libraries using the pyzotero Python client.
Show qmd configuration and index status for this project.
When the user wants to improve product quality, implement quality control systems, reduce defects, or analyze quality data.
Query logs from Axiom for debugging (read-only, no ingestion allowed)
Quantum mechanics simulations and analysis using QuTiP (Quantum Toolbox in Python).
R visual creation and ggplot2 patterns for PBIR reports.
Report which research-corpus radar sidecars are overdue for refresh.
Create, inspect, validate, explain, and improve Ralph hat collections.