Data Science & ML Agent Skills for Windsurf (legacy)

Quantum kernel computation skill for quantum machine learning

QuTiP/quimb tensor network skill for quantum many-body simulations and entanglement analysis

Rasa NLU pipeline configuration and training for intent and entity extraction

RL training for robot control using simulation with sim-to-real transfer

ROOT/CERN data analysis skill for high-energy physics data processing, histogramming, and statistical analysis

BAM/SAM file manipulation skill for sorting, indexing, filtering, and extracting alignment data

Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData.

Machine learning: clustering, PCA/t-SNE/UMAP, classification, prediction regression (Ridge/Lasso/ensemble), cross-validation, Pipelines.

Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional

Deep learning for single-cell analysis using scvi-tools.

Seldon Core deployment skill for model serving, A/B testing, and canary deployments on Kubernetes.

Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy skill for morphology and elemental analysis

Tail, read, or search a Stata log file from a previous command or background task.

Use when the user asks to run a full empirical / causal analysis in Python — by default in the style of an applied economics paper (AER /…

UV-Vis-NIR spectroscopy skill for optical property characterization including plasmon resonance and bandgap analysis

Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized

Periodically check WandB metrics during training to catch problems early (NaN, loss divergence, idle GPUs).

Workflow 1.5: Bridge between idea discovery and auto review.

Automate Wolfram Alpha API tasks via Rube MCP (Composio).

Atomic Force Microscopy and Scanning Probe Microscopy skill for nanoscale topography, mechanical, and electrical property mapping

AlphaFold protein structure prediction skill with confidence assessment and model analysis