Research Agent Skills

Analyze and restructure mathematical proofs for clarity and completeness

Search, browse, and retrieve scientific protocols from protocols.io via REST API.

Develop, validate, and adapt measurement instruments including factor analysis, reliability testing, and cross-cultural validation

This skill covers publication-quality tables and figures for academic research papers.

Review regression outputs, tables, and graphs for publication readiness.

Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and…

Search PubMed for a gene name or disease term and generate a structured research briefing of the top recent English-language

Verify that every quantitative claim in the paper is traceable to an analysis output file, and that no important output was omitted.

Skill for generating randomization schemes for experiments

Organize and execute Stata workflows for referee responses, robustness requests, and coauthor follow-ups.

Research Guardian - Ethics Advisory & Bias Detection across all research stages Enhanced VS 3-Phase process: Surface-level screening, deep…

Get a deep critical review of research from an external reviewer backend (Codex or manual).

Use when `paper-review` has claims plus evidence gaps and needs the final referee-style report.

Use when incrementally reviewing and repairing low-quality metadata after enrich, especially non-standard documents that need title…

Automate Semanticscholar tasks via Rube MCP (Composio).

Sibyl Codex independent third-party review - uses OpenAI Codex to provide a different AI perspective review.

Sibyl simulated reviewer agent - re-evaluates rebuttal from a real reviewer's perspective.

Run a full 6-phase autonomous replication of a biomedical/epidemiology paper against UK Biobank or similar cohort data, producing Python…

Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE…

Download, split, and deeply read academic PDFs.

Conduct rigorous thematic analysis (TA) of qualitative data following Braun and Clarke's (2006) six-phase framework.